Life Science

Combining Low Resolution, High Resolution, Functional, and Simulation Techniques: In the Study of Pentameric Ligand-Gated Ion Channels

PhD: Marie Lycksell, Stockholm University (2022)

This project investigated the structure and functional modulation of pentameric ligand-gated ion channels (pLGICs)—membrane proteins that convert chemical signals into electrical responses and represent key drug targets in humans. Using an integrated methodological approach that combined small-angle neutron scattering (SANS), cryo-electron microscopy (cryo-EM), electrophysiology, and molecular dynamics simulations, the research explored the bacterial model systems GLIC and DeCLIC to reveal how these proteins function and respond to modulators such as general anaesthetics.

Neutron scattering and simulation data were used together to describe the solution structures and conformational flexibility of the channels, while cryo-EM identified new structural states, including an open conformation of DeCLIC consistent with scattering observations.

By merging experimental and computational perspectives, this work deepened the understanding of allosteric modulation and structural dynamics in ion channels and advanced methodologies for integrating neutron scattering and simulations in the study of complex membrane proteins.

Marie Lycksell obtained a Bachelor’s degree in Biotechnology and a Master’s degree in Molecular Science and Engineering from KTH Royal Institute of Technology. In her master’s thesis, she performed molecular dynamics simulations to study the interactions between an anaesthetic molecule and a pentameric ligand-gated ion channel, with a focus on protein–membrane interactions and the role of lipid composition in channel functionality.